_affected_packages() now ignores subpackages whose tests/ dir doesn't
exist on disk and stops returning None for stray root-level files left
over from rewritten history. Pre-push pytest scope is bounded to the
6 packages with real test suites instead of every diverged path.
- Move pyproject.toml, .pre-commit-config.yaml, requirements.txt, run.sh,
lint_python.sh, .fvmrc into meta/ with root symlinks preserving tool
auto-discovery.
- Combine requirements.txt + requirements-dev.txt into meta/requirements.txt
(single sorted source of truth).
- Remove setup.sh, .binary-allowlist, C/ (no native code remains),
python_pkg/{split,pdfCentered,geo_data}, scripts/check_c_cpp_build_files.sh.
- Drop clang-format/cppcheck/flawfinder/check-c-cpp-build-files hooks and
archived path excludes from pre-commit config.
- Add .secret-patterns to .gitignore and untrack it (sensitive content;
full history purge is a follow-up step).
- Move 7 loose top-level Markdown reports under docs/cleanup-2026-05/.
- Relocate batch3_bloatware_uninstall.sh into phone_focus_mode/ where its
ADB/phone wiring belongs.
- Delete tracked out.json (empty puzzle_solver fixture).
- Remove untracked clutter (mp4/wav/lcov/log/txt) from the working tree.
Adds 1410710, 10500, 813780, 489830 to PROTECTED_APP_IDS so the enforcer
will not uninstall them. Existing tests patch the set, so test outcomes
are unaffected.
- music_parallelism.sh + thesis_work_tracker.sh: tighter state-output and
error paths; expanded regression tests.
- hosts-file-monitor.sh + shutdown-timer-monitor.sh: harden against partial
failures, matching new test branches.
- i3blocks persist_common.sh helper improved (consumed by activitywatch /
warp status blocks).
- setup_midnight_shutdown.sh + thesis_work_status.sh: state parsing tuned.
- pacman_blocked_keywords.txt: drop one obsolete entry.
- New test_thesis_work_status.sh regression script.
All six bash regression tests pass.
Adds a sick-day exemption flow with debt tracking so workout enforcement
can be skipped on declared sick days while preserving phone-verification
and shutdown invariants.
- New _sick_tracker module persists sick_history.json (days, debt, commitments).
- New _sick_dialog integrates declaration into the lock UI flow.
- _ui_flows.py and screen_lock.py consult tracker before enforcing workouts.
- gitignore sick_history.json (runtime state, like sick_day_state.json).
- 304 tests pass; 100% branch coverage on every screen_locker file.
