- Move all linux_configuration scripts into two semantic categories:
- single_use/: scripts run once manually (fresh install, fixes, setup)
- periodic_background/: scripts run by systemd timers or daemons
- Preserve existing subdirectory structure within each category
- Fix lib/common.sh source paths for new directory depths
- Fix CONFIG_DIR depth in setup_periodic_system.sh and check_and_enable_services.sh
- Update all references in tests, fresh-install/main.sh, nix modules, and docs
- Fix check_polling_antipatterns.sh false positives (||, regex |, case patterns, jq strings)
- Fix pre-existing mypy exclusion path and type annotations for moved tools/ directory
- Rewrite check_polling_antipatterns.sh using awk (no bash regex loops); add require_serial: true
- Move pyproject.toml, .pre-commit-config.yaml, requirements.txt, run.sh,
lint_python.sh, .fvmrc into meta/ with root symlinks preserving tool
auto-discovery.
- Combine requirements.txt + requirements-dev.txt into meta/requirements.txt
(single sorted source of truth).
- Remove setup.sh, .binary-allowlist, C/ (no native code remains),
python_pkg/{split,pdfCentered,geo_data}, scripts/check_c_cpp_build_files.sh.
- Drop clang-format/cppcheck/flawfinder/check-c-cpp-build-files hooks and
archived path excludes from pre-commit config.
- Add .secret-patterns to .gitignore and untrack it (sensitive content;
full history purge is a follow-up step).
