atop's `-P PRC` output inserts the clock-tick rate (HZ=100) between the
`state` and `utime` columns. Both the Python parser and the native C
aggregator read that constant as utime for every record, charging a flat
1 CPU-second per record — so cpu_seconds collapsed to pid_count and
short-lived fork-storm commands (xset, dd, chronyc) topped the CPU table
(xset showed 67h). The old test fixtures lacked the HZ field, so code and
tests agreed on the bug.
- _parse_prc / atop_agg.c: read utime/stime past the HZ field (after+2/+3,
tokens[10]/[11]); bump the length guards accordingly
- restore C/atop_agg (deleted in 89b4f59) under linux_configuration/C/,
where the build path resolves; corrected test fixtures to include HZ
- _atop_agg_binary: fall back to the Python parser when the C source tree
is gone instead of trusting an orphaned cached binary
- add regression tests proving HZ is not summed as CPU
- bundle the in-progress since-last-report multi-day aggregation (segments,
-b/-e bounding, persisted state, window merging) and its tests/conftest
- meta: gate linux_configuration/tests in pytest_changed_packages.py
Verified by running usage_report.py --date 20260604: Top CPU now led by
SkyrimSE; xset/dd/chronyc fall to ~0. C unit tests + full pytest suite green.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
- linux_configuration/tests: update script paths after periodic_background/
reorganisation (hosts_file_monitor, makepkg_capped, music_parallelism,
shutdown_timer_monitor, usage_monitoring_installer_efficiency)
- test_i3blocks_efficiency.sh: remove checks for HEARTBEAT_INTERVAL_S and
WARP_POLL_INTERVAL_S constants that no longer exist
- test_pacman_wrapper_security.sh: remove tests 20-21 (builtin time helpers /
external date calls) that are no longer applicable; update path
- generate_hosts_file.sh: add sed unblock rules for delio.com.pl and
loverslab.com to stay consistent with install.sh whitelist
- steam_backlog_enforcer/scanning.py: remove unplayable_reason arg from
logger.info call (too many format args); drop matching test assertion
- steam_backlog_enforcer/tests/test_protondb.py: add
test_unplayable_reason_no_trending_tier to restore 100% branch coverage
on protondb.py line 97 (was previously covered indirectly)
- Move all linux_configuration scripts into two semantic categories:
- single_use/: scripts run once manually (fresh install, fixes, setup)
- periodic_background/: scripts run by systemd timers or daemons
- Preserve existing subdirectory structure within each category
- Fix lib/common.sh source paths for new directory depths
- Fix CONFIG_DIR depth in setup_periodic_system.sh and check_and_enable_services.sh
- Update all references in tests, fresh-install/main.sh, nix modules, and docs
- Fix check_polling_antipatterns.sh false positives (||, regex |, case patterns, jq strings)
- Fix pre-existing mypy exclusion path and type annotations for moved tools/ directory
- Rewrite check_polling_antipatterns.sh using awk (no bash regex loops); add require_serial: true
- music_parallelism.sh + thesis_work_tracker.sh: tighter state-output and
error paths; expanded regression tests.
- hosts-file-monitor.sh + shutdown-timer-monitor.sh: harden against partial
failures, matching new test branches.
- i3blocks persist_common.sh helper improved (consumed by activitywatch /
warp status blocks).
- setup_midnight_shutdown.sh + thesis_work_status.sh: state parsing tuned.
- pacman_blocked_keywords.txt: drop one obsolete entry.
- New test_thesis_work_status.sh regression script.
All six bash regression tests pass.
