wip: added distributed arrays

This commit is contained in:
Krzysztof Rudnicki 2024-12-05 20:09:44 +01:00
parent b255edad36
commit 39cc08350d
5 changed files with 110 additions and 2 deletions

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@ -1,6 +1,12 @@
{
"recommendations": [
"github.vscode-github-actions",
"yzhang.markdown-all-in-one"
"yzhang.markdown-all-in-one",
"ms-python.autopep8",
"nwgh.bandit",
"ms-python.black-formatter",
"usernamehw.errorlens",
"ms-python.debugpy",
"ms-python.vscode-pylance"
]
}

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@ -6,6 +6,7 @@ from abc import ABC, abstractmethod
from concurrent.futures import ThreadPoolExecutor
from functools import partial
from time_measurement import time_measurement, time_accumulator
import dask.array as da
class LinearAlgebraUtils(ABC):
@staticmethod
@ -471,3 +472,98 @@ class ProcessLinearAlgebraUtils:
except Exception as e:
print(f"Error during Gaussian elimination: {e}")
return None
class DistributedArraysLinearAlgebraUtils(ABC):
@staticmethod
@time_measurement(time_accumulator)
def dot_product(v1, v2):
dv1 = da.from_array(v1, chunks='auto')
dv2 = da.from_array(v2, chunks='auto')
return da.dot(dv1, dv2).compute()
@staticmethod
@time_measurement(time_accumulator)
def matrix_vector_multiply(A, x):
dA = da.from_array(A, chunks='auto')
dx = da.from_array(x, chunks='auto')
return da.dot(dA, dx).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def vector_norm(v):
dv = da.from_array(v, chunks='auto')
return da.linalg.norm(dv).compute()
@staticmethod
@time_measurement(time_accumulator)
def vector_scalar_divide(x, scalar):
dx = da.from_array(x, chunks='auto')
return (dx / scalar).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def matrix_scalar_multiply(A, w):
dA = da.from_array(A, chunks='auto')
return (dA * w).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def vector_vector_subtraction(v1, v2):
dv1 = da.from_array(v1, chunks='auto')
dv2 = da.from_array(v2, chunks='auto')
return (dv1 - dv2).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def vector_vector_addition(v1, v2):
dv1 = da.from_array(v1, chunks='auto')
dv2 = da.from_array(v2, chunks='auto')
return (dv1 + dv2).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def scalar_vector_multiply(omega, vector):
dvector = da.from_array(vector, chunks='auto')
return (omega * dvector).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def matrix_norm(A):
dA = da.from_array(A, chunks='auto')
return da.linalg.norm(dA).compute()
@staticmethod
@time_measurement(time_accumulator)
def matrix_matrix_subtraction(A, B):
dA = da.from_array(A, chunks='auto')
dB = da.from_array(B, chunks='auto')
return (dA - dB).compute().tolist()
@staticmethod
@time_measurement(time_accumulator)
def gaussian_elimination(A, b):
try:
dA = da.from_array(A, chunks='auto')
db = da.from_array(b, chunks='auto')
Ab = da.hstack([dA, db[:, None]])
Ab = Ab.persist()
def elimination_step(Ab, k):
n = Ab.shape[0]
max_index = da.argmax(da.abs(Ab[k:, k])) + k
Ab[[k, max_index]] = Ab[[max_index, k]]
Ab = Ab.persist()
factor = Ab[k + 1:, k] / Ab[k, k]
Ab[k + 1:] -= factor[:, None] * Ab[k]
return Ab
for k in range(A.shape[0]):
Ab = elimination_step(Ab, k)
x = da.zeros(A.shape[0])
for i in range(A.shape[0] - 1, -1, -1):
x[i] = (Ab[i, -1] - da.dot(Ab[i, i + 1:-1], x[i + 1:])) / Ab[i, i]
return x.compute().tolist()
except Exception as e:
print(f"Error during Gaussian elimination: {e}")
return None

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@ -4,3 +4,4 @@ class ProcessingType(Enum):
SEQUENTIAL = auto()
THREADS = auto()
PROCESSES = auto()
DISTRIBUTED_ARRAYS = auto()

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@ -1,2 +1,3 @@
scipy
pytest
dask

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@ -41,7 +41,8 @@ class RichardsonMethod:
methods = {
ProcessingType.SEQUENTIAL: linAlg.SequentialLinearAlgebraUtils,
ProcessingType.THREADS: linAlg.ThreadsLinearAlgebraUtils,
ProcessingType.PROCESSES: linAlg.ProcessLinearAlgebraUtils
ProcessingType.PROCESSES: linAlg.ProcessLinearAlgebraUtils,
ProcessingType.DISTRIBUTED_ARRAYS: linAlg.DistributedArraysLinearAlgebraUtils
}
try:
@ -77,6 +78,9 @@ class RichardsonMethod:
case linAlg.ProcessLinearAlgebraUtils:
sequential_time = total_time - time_accumulator.total_time
print(f"Total: {total_time:.3e}s, Seq: {sequential_time:.3e}s, Parallel (processes): {time_accumulator.total_time:.3e}s, Tests time: {tests_time.total_time:.3e}s")
case linAlg.DistributedArraysLinearAlgebraUtils:
sequential_time = total_time - time_accumulator.total_time
print(f"Total: {total_time:.3e}s, Seq: {sequential_time:.3e}s, Parallel (distributed arrays): {time_accumulator.total_time:.3e}s, Tests time: {tests_time.total_time:.3e}s")
case _:
print("Unhandled LinAlg type")